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Prostate gold seed segmentation in the browser
SeedSeg is a browser-based tool for automatic segmentation of gold fiducial markers in T1-weighted prostate MRI.
It uses a consensus of four 3D UNet models to detect three gold seed markers used in prostate radiotherapy treatment planning.
All computation runs locally in your browser using ONNX Runtime Web. No data is uploaded to any server.
SeedSeg runs entirely in your web browser using WebAssembly and ONNX Runtime. All processing occurs locally on your machine.
SeedSeg uses ONNX Runtime Web to run deep learning models directly in the browser via WebAssembly. Your NIfTI or DICOM files are read into browser memory, processed locally, and results are displayed without any network transfer.
SeedSeg does not use analytics, tracking, cookies, or any external services. The only network requests are loading the application itself and downloading model files (which are cached locally).
Stewart, A. W., Goodwin, J., Richardson, M., Robinson, S. D., O'Brien, K., Jin, J., ... & Bollmann, S. (2023). Deep-Learning-Enabled Differentiation between Intraprostatic Gold Fiducial Markers and Calcification in Quantitative Susceptibility Mapping. bioRxiv, 2023-10.
DOI: 10.1101/2023.10.26.564293SeedSeg uses the following methods. Please cite the relevant papers if you use these in your research.
Eckstein, K., Trattnig, S., Robinson, S. D. (2019). A Simple Homogeneity Correction for Neuroimaging at 7T. Proc. ISMRM 27th Annual Meeting.
The following repositories were used as references: